Welcome to the pAPRica documentation!

pAPRica (pipelines for Adaptive Particle Representation image compositing and analysys) is a package for accelerated processing of microscopy data based on the Adaptive Particle Representation (APR). It contains separate modules for file parsing and loading, APR conversion, visualization, stitching, segmentation, and atlas registration.

Usage

• How to install
• Generating documentation
• Testing
• Tutorials
  • Parse and load data-sets
  • Batch convert voxel data to APR.
  • Stitch single channel data
  • Advanced stitching

API reference:

• paprica.atlaser
• paprica.batcher
• paprica.converter
• paprica.loader
• paprica.parser
• paprica.segmenter
• paprica.stitcher
• paprica.viewer
• paprica.runner

Indices and tables

• Index

• Module Index

• Search Page